Jensen MA, Li FS, van 't Wout AB, Nickle DC, Shriner D, He HX, McLaughlin S, Shankarappa R, Margolick JB, Mullins JI 2003 Improved coreceptor usage prediction and genotypic monitoring of R5-to-X4 transition by motif analysis of human immunodeficiency virus type 1 env V3 loop sequences. Journal of virology772413376-88 pubmed
Appendix: Supplemental material

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Description: Figure S2: Cross-validation of X4 and SI PSSM for varying X4 prevalence. Sens: sensitivity, Spec: specificity of CXCR4-use/SI prediction. Boxes span interquartile range of values, for 100 validation iterates (see paper); error bars indicate range. Stippled and open boxes are results using charge based methods (see paper).
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Department of Microbiology
School of Medicine
University of Washington
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