HIV-1 HMA Subtyping Kit             James I. Mullins
FASTA

A multiple-sequence alignment of the kit's HIV-1 subtype reference sequences is presented below in FASTA format:

Note that half the HMA primers were reversed and complemented to match the strand orientation of the alignment (near the bottom of this page).  These primers are indicated within their sequence names by "REVERSECOMPLEMENT."  Subtypes are indicated after the hyphens.

 

 

>sf170-A3
ATGGGACCAGAGTCTAAAGCCATGTGTAAAGTTAACCCCTCTCTGCGTTACTTTAAATTG
TAGCCAT---AACATCACCACC---------------------------------CATAA
CATCACCACCAACAACCCCAATATCACCAAATACATGGAAGGAGAAATAAAGAACTGCTC
TTACAATATGACCACAGAACTAAGGGATAAGAAACAGAAAGTGTATTCACTTTTTTATAA
ACTTGATGTAGTACCAATTGATAAAAATAATGGTAATAACAATATAAGGACTCAGTATAG
ATTAATAAATTGTAATACCTCAGCCATTACACAGGCTTGTCCAAAAGTATCCTTTGAGCC
AATTCCCATACATTATTGTGCTCCAGCTGGTTTTGCGATTCTAAAGTGTAATGATGCAGA
GTTCAATGGAACAGGGCCATGCAAGAATGTCAGCACAGTACAATGCACACATGGAATCAG
GCCAGTA-ATATCAACCCAACTGCTGTTAAATGGCAGTCTAGCAGAAGGAAGGGTAAAGA
TTAGATCTGAAAATATCACAAACAATGCCAAAACCATAATAGTACAACTTAACAAGACTG
TAGAAATTAATTGTACCAGACCTAACAACAATACAAGAAAAAGTGTACGTATAGGACCAG
GACAAGCATTCTATGCAACAGGTGACATAATAGGGGATATAAGACAAGCATATTGTAATG
TCAGTAGAGCAGACTGGAATAAAACTTTACAAGGGGTAGCCAACCAATTAAAAAGTTACT
TTAGTAACAAAACAATAATCTTTGCTAGCTCCTCAGGAGGGGATTTAGAAATTACAACAC
ATAGTTTTAATTGTGGAGGAGAATTTTTTTATTGTGATACATCAGGCCTGTTTAATAGCA
CATGGGGGGGAAATAGCACTGACAGCATACAGGAGTCAAATAGCACAGAGTCAAATGACA
CTATAATTCTCCCATGCAGAATAAAGCAAATTATAAATATGTGGCAGAGAGTAGGACAAG
CAATGTATGCCCCTCCCATC---CAAGGAGTAATAAAGTGTATATCAAATATTACAGGAC
TTCTATTAACAAGAGATGGTGG---------GGA------TAATAACAGTGCA------A
ATGAAACCTTCAGACCTACAGGAGGAAATATGAGGGACAATTGGAGAAGTGAATTATATA
AGTATAAAGTAGTAAAAATTGAACCACTAGGAGTAGCACCCACCCCGGCAAAGAGAAGAG
TGGTGCAG---AGAGAAAAAAGAGCAGTTGGA---ATAGGAGCTGTATTCATTGGGTTCT
TAGGAGCAGCCGGAAGCACT

>br20-B1
ATGGGATCAAAGCCTAAAGCCTTGTGTAAAGTTAACCCCACTCTGTGTTACTTTAAATTG
CATTGATTTGAAT------------------------------------AATAGTACTAA
CAACAATAATAGTAGTGGGGTAAAAACAGGGATAGACAAGGGAGAGATAAAAAACTGCTC
TTTCAATACCACCACAAGTGTAAAAGATAAGGAGAAGAAGGAATATGCTCTCTTCTATAA
TCTTGATGTAGTACAAAT---------AGGTAATGATAA------TACTAGC---TATAG
ATTGACAAGTTGTAATACCTCAGTCATTACCCAGGCCTGTCCAAAGGTAACCTTTGAGCC
AATTCCCATACATTATTGTACCCCGGCTGGTTATGCGATTCTAAAGTGTAATGGTAAGAA
GTTCAATGGAACAGGACCCTGTACAAATGTCAGCACAGTACAATGTACACATGGAATTAA
GCCAGTA-GTGTCCACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGATATAGTAA
TTAGATCTGAAAATCTCACAAACAATGCTAAAACCATAATAGTGCAGCTAAAGGACCCTG
TAGACATTAATTGTACAAGACCCAACAACAATACAAGAAAGAGTATACATATAGGACCAG
GGAGAGCATTTTATGCAACAGGAGACATAATAGGAGATATAAGACAAGCACATTGTAACC
TTAGCAGAGCACAATGGAATGACACTTTAAGCAAGATAGTTACAAAATTAAGAGAACAAT
TTGAGAATAAAACAATAAAGTTTCAGCCACCCTCAGGAGGGGATCCAGAAATTGTATTTC
ACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACAACACAACTGTTTAATAGTA
CCTGGACAAATAACAC---TGAAGGGACAAGTAACACTACAGGGAATGACAC--------
-AATCACACTCCCATGTAGAATAAAACAAATTGTAAACATGTGGCAGGAAGTAGGAAAAG
CAATGTATGCCCCTCCCATC---AAGGGAAAAATTAAATGTTCATCAAACATTACAGGGC
TACTATTGACAAGGGATGGTGG---------TAA------TAATGAGATGAAC---ACGA
CCGAGATCTTCAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGGAGTGAATTATATA
AATATAAAGTAGTAAGAATTGAACCATTAGGAATAGCACCCACCAGGGCAAAGAGAAGAG
TGGTGCAA---AGAGAAAAAAGAGCAGTGGGAACATTAGGAGCTATGTTCCTTGGGTTCT
TGGGAGCAGCAGGAAGCACT

>th14-B2
ATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAACTG
CACTGATTTGAGG------------------------------------AATGCTACTAA
TACCAGTAGTACA------------------ATGGAGGGAGGAGAAATAAAAAACTGCTC
TTTCAATATCACCACGAGCATAAAAACTAAGGTA---AAAGACTATGCACTTTTTTATAA
ACTTGATGTAGTACCAAT---------AGATAATGATAA------TACCAGC---TATAG
GTTGATAAATTGTAACACCTCAGTCATTACACAAGCTTGTCCAAAGGTATCCTTTGAGCC
AATTCCCATACATTATTGTACCCCGGCTGGTTTTGCGATTCTACAGTGTAACAATAAAAA
GTTCAATGGAACAGGACCATGTACAAATGTCAGTACAGTACAATGTACACATGGAATTAG
GCCAGTA-GTATCAACTCAACTGCTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAA
TTAGATCTAGCAATTTCACGGACAATGCTAGAGTCATAATAGTACAGCTGAATGAATCTG
TAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACATCTAGGACCAG
GGCGAGCATGGTATACAACAGGACAAATAATAGGAGATATAAGACAAGCACATTGTAACC
TTAGTAGCACAAAATGGAATAACACTTTAAGACAGATAACTGAAAAATTAAGAGAACAAT
TTGGGAACAAAACAATAGTCTTTAATCAATCCTCAGGAGGGGACCCAGAGATTGTAATGC
ACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACAACACAACTGTTTAATAGTA
CTTGGAATGATACTAG---TACTTGG---AATAATAATACAGGAAATGGCAC--------
-TATCACGCTCCCTTGCAGAATAAAACAAATTGTAAACATGTGGCAGGAAGTAGGAAAAG
CAATGTATGCCCCTCCCATC---AGAGGACAAATTAGATGTTCATCAAATATTACAGGGT
TGCTATTAACAAGAGATGGTGG---------TAA------TAGTGAGAACAAG---ACCA
CCGAGACCTTCAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATA
AATATAAAGTAGTGAAAATTGAACCATTAGGAGTAGCACCCACCAAGCCAAAGAGAAGAG
TGGTGCAG---AGAGAAAAAAGAGCAGTGGGAACGATAGGAGCTATGTTCCTTGGGTTCT
TGGGAACAGCAGGAAGCACT

>sf162-B3
ATGGGATCAAAGTCTAAAGCCATGTGTAAAGTTAACCCCACTCTGTGTTACTCTACATTG
CACTAATTTGAAG------------------------------------AATGCTACTAA
TACCAAGAGTAGTAAT------TGGAAAGAGATGGACAGAGGAGAAATAAAAAATTGCTC
TTTCAAGGTCACCACAAGCATAAGAAATAAGATGCAGAAAGAATATGCACTTTTTTATAA
ACTTGATGTAGTACCAAT---------AGATAATGATAA------TACAAGC---TATAA
ATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAACC
AATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAATGATAAGAA
GTTCAATGGATCAGGACCATGTACAAATGTCAGCACAGTACAATGTACACATGGAATTAG
GCCAGTA-GTGTCAACTCAATTGCTGTTAAATGGCAGTCTAGCAGAAGAAGGGGTAGTAA
TTAGATCTGAAAATTTCACAGACAATGCTAAAACTATAATAGTACAGCTGAAGGAATCTG
TAGAAATTAATTGTACAAGACCTAACAATAATACAAGAAAAAGTATAACTATAGGACCGG
GGAGAGCATTTTATGCAACAGGAGACATAATAGGAGATATAAGACAAGCACATTGTAACA
TTAGTGGAGAAAAATGGAATAACACTTTAAAACAGATAGTTACAAAATTACAAGCACAAT
TTGGGAATAAAACAATAGTCTTTAAGCAATCCTCAGGAGGGGACCCAGAAATTGTAATGC
ACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATTCAACACAGCTTTTTAATAGTA
CTTGGA---ATAATAC---TATAGGGCCAAATAACACT------AATGGAAC--------
-TATCACACTCCCATGCAGAATAAAACAAATTATAAACAGGTGGCAGGAAGTAGGAAAAG
CAATGTATGCCCCTCCCATC---AGAGGACAAATTAGATGCTCATCAAATATTACAGGAC
TGCTATTAACAAGAGATGGTGG---------TAA------AGAGATCAGTAAC---ACCA
CCGAGATCTTCAGACCTGGAGGTGGAGATATGAGGGACAATTGGAGAAGTGAATTATATA
AATATAAAGTAGTAAAAATTGAGCCATTAGGAGTAGCACCCACCAAGGCAAAGAGAAGAG
TGGTGCAG---AGAGAAAAAAGAGCAGTG---ACGCTAGGAGCTATGTTCCTTGGGTTCT
TGGGAGCAGCAGGAAGCACT

>ma959-C1
ATGGGATCAAAGCCTAAAGCCATGTGTAAAGTTGACCCCACTCTGTGTCACTTTAAATTG
TAGCAATGCTAAC---------------------------------------------AA
CACTGCTACCAATAATGTAACTGCTACCAATAATGTAACCAGTGACATGAAAAATTGTTC
TTTCAATGCAACCACAGAATTAAGAGATAAGAGACAGAAAGTGTATGCACTTTTTTATAA
ACTTGATATAGTACCACTTAATGAGAAGGATAACAGCAG------CTCTGGAGAATATAG
ATTAATAAATTGCAGTACCTCAACTGTAACACAAGCCTGTCCAAAGGTCTCTTTTGACCC
AATTCCTATACATTATTGTACTCCAGCTGGTTATGCGATTCTAAAGTGTAATAATAAGAC
ATTCAATGGGACAGGACCATGCCATAATGTCAGCACAGTACAGTGTACACATGGAATTAA
GCCAGTG-GTATCAACTCAACTACTGTTAAATGGTAGCCTAGCAGAAGGAGAAATAATAA
TTAGATCTGAAAATCTGACAAACAATGTCAAAACAATAATAGTGCACCTTAATGAATCTG
TAGAAATTGTGTGTACAAGACCCAACAATAATACAAGAAGAAGTATAAGAATAGGACCAG
GACAAGTATTCTATGCAAATAATGACATAATAGGAGACATAAGACAAGCACATTGCAACA
TTAGTAAGGATGTCTGGAACAGTACTTTACAAAAGGTAGGTAAAAAATTAAAAGAACACT
TCCCTAATAAAACAATAACATTTGAACCACACTCAGGAGGAGATCTAGAAATTACAACAC
ATAGTTTTAATTGTAGAGGAGAATTTTTCTATTGCAATACATCAGGGCTGTTTAATAGTA
---------ACTTTAA---TGATACAGAAGGTAATTCA------ACTTTAAG--------
-CATAACCCTCCCATGCAGAATAAAACAAATTATAAACATGTGGCAGGAGGTAGGACGAG
CAATGTATGCCCCTCCCATT---GAAGGAAACATAACATGTAAATCAAATATCACAGGAC
TACTATTGACACGTGGTGGAGG---------TCC------A---ACTAACACA---AAGA
CAGAGACATTCAGGCCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATA
AGTATAAAGTGGTAGAAATTAAGCCATTGGGAGTAGCACCCACTAAGGCAAAAAGGAGAG
TGGTGGAG---AGAGAAAAAAGAGCAGTGGGA---ATAGGAGCTGTGTTCCTTGGGTTCT
TGGGAGCAGCAGGAAGCACT

>zm18-C2
ATGGGATCAAAGCTTAAAGCCATGTGTAAAGTTGACCCCACTCTGTGTCACTTTAGAATG
TGGAAATGTTAAT-----------------------------------------------
----------------GTTACCCATGAGAATAGCACGAAGGGGGAAATGAAAAATTGCTC
TTTCAATGCAACCACAGAACTAAAAGATAAAAAACAGAGAGTGTATGCACTTTTTTATAA
ACTTGATATAGTACCACTTAATGAGAATAACAACTCTAGTGAGGACTCTAGTGAGTATAG
ATTAATAAATTGTAATACCTCAGCCATAACACAAGCCTGTCCAAAGGTCACTTTGGATCC
AATTCCTATACATTATTGTGCTCCAGCTGGATATGCGATTCTAAAGTGTAATAATAAGAC
ATTCAATGGGACAGGACCATGCCATAATGTCAGCACAGTACAATGTACACACGGAATCAA
GCCAGTG-GTATCAACTCAACTACTGTTAAATGGTAGCCTAGCAGAAGAAGAGATAATAA
TTAGGTCTGAAAATCTAACAAACAATGCCAAAACAATAATAGTACATCTTAATGAATCTG
TAGAAATTGTGTGTACAAGACCCAGCAATAATACAAGAAAAAGTATAAGGATAGGACCAG
GACAAGCATTCTATGCAACAGGTGGCATAATAGGAAACATAAGACAAGCACATTGTAACA
TTAGTAAAGAGAACTGGAATAAAACTTTACAAAAGGTAGGAAAAAAATTAGCAGAGCACT
TCCCTAATAAAACAATAAAATTTGACCAACACTCAGGAGGGGACCTAGAAATTACAACAC
ATAGCTTTAATTGTAGAGGAGAATTTTTCTATTGCAATACATCAAACCTGTTTAATAGTA
CATATA---AGCCTAA---TGATACAAATAGTACATATAATCCTAATGATAC--------
-AATCACACTCCCATGCAGAATAAAACAAATTATAAACATGTGGCAGGGGGTAGGACAAG
CAATGTATGCCCCTCCCATT---GCAGGAAACATAACATGTAAATCAAATATCACAGGAC
TACTATTGACACGGGATGGAGG---------GTC------AAATGATACCACA---AACA
CAGAGACATTCAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAACTATATA
AATATAAAGTGGTAGAAATTAAACCATTGGGCATAGCACCCACTGCGGCAAAAAGGAGAG
TGGTGGAGACGAGAGAAAAAAGAGCAGTGGGA---ATAGGAGCTGTGTTCCTTGGGTTCT
TGGGAGCAGCAGGAAGCACT

>in868-C3
ATGGGATCCAAGCCTGAAGCCATGTGTAAAGTTGACCCCACTCTGTGTCACTTTAGAATG
TAGAGAGGTTAAT---------------------------------------------GA
T------ACTAGAAATGGGGTTAATGTTACCAATAATGGGGAAGAAATAAAAAATTGCTC
TTTCAATGCAACCACAGAAATAAGAGATAGGAAGCAGACAGTGTATGCACTTTTTTATAG
ACTTGATATAGTACCACTTGATAATAAGAAGAAGAACA---ACTCTAGTGAGTATTATAG
ATTAATAAATTGTAATACCTCAGCCATAACACAAGCCTGTCCAAAGGCCACTTTTGATCC
AATTCCTATACACTATTGTGCTCCAGCTGGTTTTGCGATTATAAAGTGTAATAATAAGAC
ATTCAATGGGACAGGACCATGCAGTAATGTCAGCACAGTACAATGTACACATGGAATTAA
GCCAGTG-GTATCAACTCAACTACTGTTAGATGGTAGCCTAGCAGAAGAAGGGATAATAA
TTAGATCTGAAAATCTGACAAACAATGCCAAAATAATAATAGTACATCTTGATCAACCTG
TAGAAATTGTGCGTACAAGACCAAACAATAATACAAGAAAAAGTATAAGGATAGGACCAG
GACAAACATTCTATGCAACAGGAGACATAATAGGAGACATAAGACGAGCATATTGTAACA
TTAGTGAAAACAAATGGAATGAAACTTTACAAAGGGTGAGTAAAAAATTAGCAGAATACT
TCCCTAATAAAACAATACAATTTGCATCATCCTCAGGAGGGGACCTAGAAATTACAACAC
ATAGCTTTAATTGTAGAGGAGAATTTTTCTATTGCAATACATCAAACCTGTTTAATGGTA
------CATACATGAA---TGGTACAAAAAGTAATTCA------AGCTCAAC--------
-CATCACAATCCTATGCAGAATAAAACAAGTTGTAAACATGTGGCAGGAGGTAGGACGAG
CAATGTATGCCCCTCCCATT---GAAGGAAACATAACATGTAAATCAAATATCACAGGAC
TACTATTGGCACGTGATGGAGG---------AAC------A---GAGTCAAAT---CATA
CAGAGATATTCAGACCTGGAGGAGGAGATATGAGGAACAATTGGAGAAGTGAATTATATA
AATACAAAGTGGTAGAAATTAAGCCATTGGGAGTAGTACCCACTACAGCAAAAAGGAGAG
TGGTGGAG---AGAGAAAAAAGAGCAGTGGGA---ATGGGAGCTGTGTTCCTTGGGTTCT
TGGGAGCAGCAGGAACCACT

>ug21-D1
ATGGGATCAAAGCCTAAAACCATGTGTAAAATTACCCCCACTCTGTGTCACTTTAAACTG
CACTGAATGGAAG------------------------------------AATGCCACCAC
TAATGCCACTAATGAGGGCATA---------------------GGAATGAAAAACTGCTC
TTTC---------ACAGAAGTAAGAGATAAGAAGAAGCAAGCATATGCACTTTTTTATAA
GCTTGATGTGGTACAAATGAATG---ATGATAATAGTAC------TAATACCAGTTATAG
ATTAATAAATTGTAATGCCTCAACCATTACACAGGCGTGTCCAAAGATATCCTTTGAGCC
AATTCCCATACATTATTGTGCCCCAGCTGGATTTGCAATTCTAAAATGTAATGATAAAAA
GTTCAATGGGACAGGTCCATGTAAAAATGTCAGCACAGTACAGTGTACACATGGGATTAA
GCCAGTA-GTGTCAACTCAACTGTTGTTGAATGGCAGTCTAGCAGAAGAAGAGATAATAA
TTAGATCTGAAAATCTCACAAATAATGCTAAAATTATAATAGTACATCTTAATGAGTCTG
TACCAATTAATTGCACAAGGCCCTACGATAAGGTAAGCTACAGGACACCTATAGGAGTAG
GGCGAGCATCCTATACAACAAG---AATAAAAGGAGATATAAGACAAGCACATTGTAACA
TTAGTGGAGAAAAATGGAATAAAACTTTACAACAGGTAGCTGCGAAATTAAGAGACCTTC
TTAACCAAACAGCAATAATTTTTAAACCATCCTCGGGAGGGGACCCAGAAATTACAACAC
ACAGCTTTAATTGTGGAGGGGAATTTTTCTACTGCAATACATCAGGACTGTTTAACAATA
GTGTATGGACATCAAA---TAGT---ACGATAGGGGCA------AATGGGAC--------
-AATCACACTCCCATGCAGAATAAAACAAATTATAAATATGTGGCAGGGAGTAGGAAAAG
CAATGTATACCCCTCCCATT---GAAGGACAAATCAACTGTTCATCAACTATTACAGGAC
TATTGTTGACAAGAGATGGTGG---------TGT------GAAAAATAATAGT---CAGA
ACGAGACCTTCAGACCTGGAGGGGGAGATATGAGAGACAACTGGAGAAATGAATTATACA
AATATAAAGTAGTAAGAATTGAACCACTAGGTCTAGCACCCACCAAGGCAAGGAGAAGAG
TGGTGGAA---AGAGAAAAAAGAGCAATAGGA---CTGGGAGCTTTGTTCCTTGGGTTCT
TGGGAGCAGCAGGAAGCACG

>ug46-D3
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-----------------------------------------------------ATAATAA
TTAGATCTGAAAATCTCACAAATAATGCTAAAACCATAATAGTACAGCTTAATGAGTCTG
TACCAATTAATTGCTCAAGGCCCTACGAAAATAAAAGACGACGTACACCTATAGGACTAG
GGCAAGCGTACTATACAACAAA---ATTAAAAGGATATATAAGACCAGCACATTGTAATA
TTAGTGGAGCAGAATGGAATAAAACTTTACAACAGGTAGCTAAAAAATTAGGAGACCTTT
TCAACCAGACAACAATAATTTTTCAACCA-------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------

>th22-E1
ATGGGATCAAAGTCTAAAGCCATGTGTAAAGTTAACTCCTCTCTGTGTTACTTTAAATTG
TACCAATGCTAATTTGATCAAT---------------------------------GTCAA
TAACATAACCAATGTCTCTAACATAATAGGAAATATAACAGATGAAGTAAGAAACTGTAC
TTTTAATATGACCACAGAAATAAGAGATAAACAGCAGAAGGTCCATGCACTTTTTTATAG
GCTTGATATAGTACAAAT---------GCATAATGAAAA------TAGTAGTGAGTATAG
GTTAATAAATTGTAATACTTCAGTCATTAAGCAGGCTTGTCCAAAGATATCCTTTGATCC
AATTCCTATACATTATTGTACTCCAGCTGGTTATGCGATTTTAAAGTGTAATGACAAGAA
TTTTACTGGGACAGGGCCATGTAAAAATGTCAGCTCAGTACAATGCACACATGGAATTAA
GCCAGTG-GTATCAACTCAATTGCTGTTAAATGGCAGTCTAGCAGAAGAAGAGATAATAA
TCAGATCTGAAAATCTCACAAACAATGCCAAAACCATAATAGTGCACCTTAATAAATCTG
TAGAAATCAATTGTACCAGACCCTCCAACAATACAAGAACAAGTATAACTATAGGACCAG
GACAAGTATTCTATAGAACAGGAGACATAATAGGAGATATAAGAAGAGCATATTGTGAGA
TTAATGGAACAAAATGGAATAAAGCTTTAAAACAGGTAACTGAAAAATTAAAAGAGCACT
TTAAT---AAGACAATAATCTTTCAACCACCCTCAGGAGGAGATCTAGAAATTACAATGC
ATCATTTTAATTGTAGAGGGGAATTTTTCTATTGCAATACAACACGACTGTTTAGTAATA
CTTGCATAAAAAATGA---AACCATGGCGGGG---TGT------AACGGCAC--------
-TATCATACTTCCATGCAAGATAAAGCAAATTATAAACATGTGGCAGGGAGCAGGACAAG
CAATGTATGCTCCTCCCATT---AGGGGAAGAATTAATTGTGTATCAAATATTACAGGAA
TACTATTGACAAGGGATGGTGG---------TGC------TAATAATGCG---------A
ACGAGACCTTCAGACCTGGAGGAGGAAATATAAAGGACAATTGGAGAAGTGAATTATATA
AATATAAAGTAGTACAAATTGAACCACTAGGAATAGCACCCACCAGGGCAAAGAGAAGAG
TGGTGGAG---AGAGAAAAAAGAGCAGTGGGA---ATAGGAGCTATGATCTTTGGGTTCT
TAGGAGCAGCAGGAAGCACT

>th06-E2
ATGGGATCAAAGTCTAAAGCCATGTGTAAAGTTAACTCCTCTCTGCGTTACTTTAAATTG
TACCAATGCTAAAGTGACCAAT---------------------------------GTCAG
TAATACAATCAATGCCCCTGACATA---GGAAATATAACAGATGAAGTAAGAAACTGTTC
TTTTAATATGACCACAGAACTAAGAGATAAGAAGCAGAAGGTCCATGCACTTTTTTATAA
GCTTGATATAGTACAA------------------GTTAA------TAGTAGTGAGTACAG
GTTAATAAATTGTAATACTTCAGTCATTAAGCAGGCTTGTCCAAAGATATCCTTTGATCC
AATTCCTATACATTATTGTGCTCCAGCTGGTTATGCGATTTTAAAGTGTAATGATAAAAA
CTTCAATGGGACAGGGCCATGTAAAAATGTCAGCTCAGTACAATGCACACATGGAATTAA
GCCAGTG-GTATCAACTCAATTGCTGTTAAATGGCAGTCTAGCAGAAGAAGAGATAATAA
TCAGATCTGAAAATCTCACAAACAATGCCAAAACCATAATAGTGTACCTTAATAAATCTG
TAGAAATCAATTGTACCAGACCCTCCAACAATACAAGAACAAGTATAACTATAGGACCAG
GACAAGTATTCTATAGAACAGGAGACATAATAGGAGATATAAGACAAGCATATTGTGAGA
TTAATGAAACAAAATGGAATGAAACTTTAAAACAGGTAACTAAAAAATTAAAAGAGCACT
TTAATAATAAGACAATAATCTTTCACCCACCCTCAGGAGGAGATCTAGAAATTATAACGC
ATCATTTTAATTGTAGAGGGGAATTTTTCTATTGCAATACACCAAAATTGTTTAATGGAA
CCATGGAGGGGCCTAA---TAACACGGAGGGGCCTAAT------AACACTAC--------
-TATCATACTTCCATGCAAGATAAAGCAAATTGTAAACATGTGGCAGGGAGCAGGACAAG
CAATGTATGCTCCTCCCATC---AGTGGAAGAATTAATTGTGTATCAAATATTACAGGAA
TACTATTAACAAGAGATGGTGG---------TGC------TAATAATACGAC------TA
ACGAGACCTTCAGACCTGGAGGAGGAAATATAAAGGACAATTGGAGAAGTGAATTATATA
AATATAAAGTAGTACAAATTGAACCACTAGGAATAGCACCCACCAGGGCAAAGAGAAGAG
TGGTGGAG---AGAGAAAAAAGAGCAGTGGGA---ATAGGAGCTATGATCTTTGGGTTCT
TAGGAGCAGCAGGAAGCACT

>bz162-F1
ATGGGATCAAAGCCTAAAGCCATGTGTGAAGTTAACCCCACTCTGTGTTACTTTAAATTG
TACTGATGCCATC------------------------------------AATAGCACT--
----AAAAACAGCACC---------CTGATGGAAGAGTCAGGGGCAATACAAAACTGTTC
TTTCAATATGACCACAGAAGTAAGAGATAAGCAGAAGAGAGTACATGCACTTTTTTATAA
ACTTGATATAGTACCAAT---------CAATGGCAGTAG------AACATCA---TACAG
GCTAATAAATTGTAATACCTCAACCATTACACAGGCTTGTCCAAAGGTATCTTGGGATCC
TATTCCCATACATTATTGTGCTCCAGCTGGTTATACGATTCTAAAGTGTAAGGATAAAAA
GTTCAATGGGACAGGGCCATGCGAGAATGTCAGCACAGTACAATGTACACATGGAATTAA
ACCAGTG-GTATCAACTCAATTGTTGTTAAATGGCAGCCTAGCAGAAGAAAGTATAGTAA
TCAGATCTCAAAATATCTCAGATAATGCAAAAATCATAATAGTACACCTTAATGAATCTG
TACAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACATATAGGACCAG
GACGGGCACTTTATGCAACAGGAGACATAATAGGAGACATCAGAAAGGCACATTGTAACG
TTAGTAGAACACAATGGAATAAGAAGTTAGACCAGGTAAAGGCAGAGTTAAAGTCTCATT
TCCCTAATGCAACAATACAATTTAACTCATCCTCAGGAGGGGACCTAGAAGTTACAATGC
ATCATTTTATTTGTAAAGGAGAATTTTTCTACTGCGATACATCAAGACTGTTCAGTAACA
C---------------------AGAATCCAATGGCACAGAATCCAATGGCAC--------
-TATCACTCTCCCATGTCGAATAAAACAAATGGTAAACATGTGGCAGGAAGTAGGACGAA
CAATGTATGCCGCTCCCATC---GCAGGAAACATTACCTGTAACTCAAATATTACAGGTC
TACTATTGACAAGAGACGGTGGGTTAGATGATGGTAGGAATACTAGTCAGACTAATCGGA
CTGAGATCTTCAGACCTGGGGGAGGAAATATGAAAGACAATTGGAGAAGTGAATTATATA
AATATAAAGTAGTAGAAATTGAACCACTAGGAGTAGCACCCACCAAGGCAAAAAGACAAG
TGGTGAAG---AGAGAAAAAAGAGCAGTGGGA---ATAGGAGCTATGTTCCTTGGGTTCT
TGGGAGCAGCAGGAAGCTCT

>bz163-F2
ATGGGATCAAAGCCTAAAGCCATGTGTGAAGTTAACCCCACTCTGTGTTACTTTAAATTG
TACTAATGCCATT------------------------------------AATGCCACTGC
CATTCAAGACGGGGAC---------CTGAAGGAAGGACCAGGGGCAATACAAAACTGTTC
TTTCAATGTGACCATGGAAGTAAGAGATAAGCAGCAGAAAGTACATGCACTGTTT-ATAG
ACTTGATATAGTACCAATTAGCAATGGAAGAAATGGCAG------TGGAGACTACTACAG
GCTAATAAATTGCAATACCTCAACCATTACACAGGCTTGTCCAAAAGTATCTTGGGGTCC
AATTCCCATACATTATTGTGCTCCAGCTGGTTATGCGATTTTAAAGTGTAATGATAAAAA
GTTCAATGGGACAGGGCCATGCAAGAATGTCGC-ACAGTACAGTGTACACATGGAATTAA
ACCAGTG-GTATCAACTCAATTGTTGTTAAATGGCAGCCTAGCAGAAGAAGATATAATAA
TCAGATCTCAAAATATCTCAGATAATGCAAAAACCATAATAGTACACTTTAATGAATCTG
TACAGATTAATTGTACAAGACCCAACAACAATACAAGAAAAGGTATACATATAGGACCAG
GACGAGCATTTTATGCAACAGGAGACATAATAGGAGACATCAGAAAGGCCCATTGTAATG
TTAGTGGAACACAATGGAATAAAACATTAGAACAAGTAAGGGCAAAGTTAAAGTCTCATT
TTCCTAATGCAACAATAAAATTTAATTCATCCTCAGGAGGGGACCTAGAAATTACAATGC
ATAGTTTTAATTGTAGAGGAGAATTTTTCTACTGCAATACATCAGGACTGTT--------
----------------------------TAACGACACAGGATCCAATGGCAC--------
-TATCACTCTCCTATGTCGAATAAAACAAATGGTAAACATGTGGCAGGAAGTGGGACGAG
CAATGTATGCCGCTCCCATC---TCAGAAAACATTACCTGTAACTCGAATATTACAGGTC
TACTATTGACAAGAGATGGTGG---------TCA------GAATAATAATCAG------A
CTGAGACCTTCAGACCTGGGGGTGGTGATATGAAAGACTATTGGAGAAGTGTATTATATA
AGTATAAAGTAGTAGAAATTGAACCACTAGGAGTAGCACCCACCAGGGCAAAAAGACAAG
TGGTGAGG---AGAGAAAAAAGAGCAGTGGGA---ATGGGAGCTTTGTTCCTTGGGTTCT
TGAGCGCGGCAGGAAGCACT

>ru131-G1
ATGGGATGAAAGCCTAAAGCCATGTGTAAAGTTAACCCCTCTCTGTGTTACTTTAAACTG
TAGAAATGTAAGCTGTACTAATTGTACTAAGGGAAAC-----------------------
----------------AACAATAGAACTGTGGAAGGCAAGGACGAAATGAAAAACTGCTC
TTTCAATGTAACTACAGAAATAAGAGATAAGAAAAAGACAGAATACGCGCTTTTCTATAA
ACTTGATGTAGTACCAATTA------ATGATGAAAGTAG------TAATAGTACTTATAG
GCTAATAAATTGTAATGTCTCAACCATTAAACAGGCTTGTCCAAAGGTGAATTTTGACCC
AATTCCCATACATTATTGTGCTCCAGCTGGTTTTGCGATTTTAAAGTGTAGGGATAAGAA
TTTCACTGGAACAGGACCATGTAAAAATGTCAGTACAGTACAATGTACACATGGAATTAA
GCCAGTG-GTATCAACTCAATTATTGCTGAATGGCAGCTTAGCAGAAGAAGAAATAATAG
TTAGATCTGAAAACTTCACAGACAATGCCAAAGTCATAATAGTGCAGCTTAATAAATCTG
TAGAAATTACATGTACCAGACCTAATAACAATACAAGAAAAAGTATAACTTTTGCACCAG
GACAAGCGCTCTATGCAACAGGTGAAATAATAGGAGATATAAGACAAGCACATTGTAATG
TTAGTAGAAAAGATTGGAATGAGATGTTGCAGAATGTGACTACAAAACTAAAAGGAATCT
TTAACAACACAAACATAACATATAACTCAGCTGCAGGAGGAGATCTAGAAATTACAACAC
ATAGTTTTAATTGTAGAGGAGAATTTTTCTATTGCAATACATCAGGACTGTTTAATAATA
G---------TGAGAA---TAACTCCACTATCGAGAAT------AACTCCAC--------
-TATCACACTCCCATGTAGGATAAAACAAATTATAATAATGTGGCAGAGAGTGGGGCAAG
CAATGTATGCCCCTCCCATC---GCAGGAAACATCACATGTATTTCAAACATTACAGGAC
TACTATTAACAAGAGATGGTGG---------GAA------CAATAATAACAGCACAAATA
ATGAGACCTTCAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATA
AGTATAAAGTAGTAAGAATTAAACCACTAGGAGTAGCACCCACCAGG-------------
------------------------------------------------------------
--------------------

>lbv21-G2
ATGGGATGAAAGCCTAAAGCCATGTGTAAAGTTAACCCCTCTCTGTGTTACCTTAAACTG
TACTAAT------------------GCAATCGCTAATGTAACCAACAGCAATAAGACTAG
TAACAACAGCAGCCTTGGGAATAGCACTGTGAGTAGCATAGAAGAAATGAAAAACTGCTC
TTTCAATATAACCACAGAAGTAAGAGATAAGAGTAAGAAAGAATACGCTCTTTTCTATAG
ACTTGATGTGGTACCAATTAATGGTAATGAAAATAGTAG------TACAACTGATTATAG
GCTAATAAATTGTAATGCCTCAACCATTAAACAAGCTTGTCCAAAGGTGACTTTTGACCC
AATTCCCATACATTATTGCGCTCCAGCTGGGTTTGCGATTCTAACATGTAGGGATAAGAA
GTTCAATGGAACAGGACCGTGTAAAAATGTCAGTACAGTGCAATGTACACATGGAATTAA
GCCAGTG-GTATCAACTCAATTACTGCTGAATGGCAGTTTAGCAGAAGAAGAAATAATGA
TTAGATCTGAAAACTTCACAAACAATGCCAAAAACATAATAGTGCAATTTAATAAATCTA
TAGATATTGTGTGTACCAGACCCAACAACAATACAAGAAAAAGTATACACATAGGACCTG
GACAAGCATTATATGCAACAGGCGCCATAATAGGCGATATAAGACAAGCACATTGTAATG
TTAGTGAAACAGACTGGAGAGACATGTTACAGAAGGTAAAAGCACAACTACAAGGAATCT
ACAACAAAAGC---ATAACCTTTAACTCATCCTCAGGAGGGGACCTAGAAATTACAGCAC
ATAGTTTTAATTGTAGAGGAGAATTTTTCTATTGTAATACATCAGGACTGTTTAATAGTA
GTATATTATCTAACAA---TAATGCACCATCTAATAGC------AGTAAGAA--------
-TATCACACTCCCATGTAGAATAAAACAAATTGTAAGAATGTGGCAGAGGGTGGGACAAG
CAATGTATGCCCCTCCCATT---GCAGGAAACATTACATGTAAATCAAACATTACAGGAC
TAATATTAACAAGAGATGGTGG---------GAA------TAGTACCAATGGA------A
ATGAGACCTTCAGACCTGCAGGAGGAGACATGAGGGACAATTGGAGAAGTGAATTATATA
AGTATAAAGTAATAAAAATTAAACCACTAGGAGTAGCACCCACCAAGGCAAGGAGAAGAG
TGGTGGGG---AGAGAAAAAAGAGCAATTACT------GGAGCTGTCTTCCTTGGGTTCT
TAGGAGCAGCTGGGAGCACT

>vi525-G3
ATGGGATGAAAGCTTAAAGCCATGTGTAGAGCTAACCCCTCTCTGTGTTACTTTAAACTG
TACTAAGGTAACCTACAATAGCACTGCAGCCAACAATAGATCATCCACTGTCACCACCCC
TACTAGTACTGTAACCAACAATAGCACTGTGAGTGGCAAAGAAGAAATGACAAACTGCTC
TTTCAATGTAACCACAGAACTAAGAGATAAGCAGAAGGCAGAATACGCGCTTTTCTATAA
ACTTGATGTAGTACCAAT---------TGATAATAATAG------AAATGATAGTTATAG
GCTAATACATTGTAATGTCTCAACCATTAAACAGGCTTGTCCCAAGGTATCTTTTGAACC
AATTCCCATACATTATTGTGCTCCAGCTGGTTTTGCAATTTTAAAGTGTAGGGAGAAGAA
TTTCACTGGAACAGGACTATGTAAAAATGTCAGTACAGTACAATGTACACATGGAATTAA
GCCAGTG-GTATCAACTCAACTACTGCTGAATGGCAGTTTAGCAGAAAAAGAAATTATAA
TTAGATCTGAAAACTTCACAAACAATGCCAAAGTCATAATAGTGCAGCTTAATGAAACTG
TAGAAATTAATTGTACCAGACCCAACAACAATACAAGAAAAAGTATAAAATTCGGAACAG
GACGAGTGTTATATGCAACAGGTGCCATAATAGGAAATATAAGACAAGCACATTGTAATG
TTAGTACAGAAAAATGGGGTAAGATGTTACAGAATGTAGCTGCAAAACTACAAAAAGAAT
TTAATAAA---AACATAACCTTTAACTCATCCTCAGGAGGGGACCTAGAAATTACAACAC
ATAGTTTTAATTGTAGAGGAGAATTTTTTTATTGTAAGACATCAGAGCTGTTTAATAGTA
CTTGGTTGTTTAATAGTACTG---GGCTGGTTAATAGTACTTGGAATGATACACGAAAAG
ATATTACACTGCAATGCAAAATAAAACAAATTGTGAGAATGTGGCAGAGAGTGGGACAAG
CAATGTATGCCCCTCCCATCGCAGCAGGAAACATTGAATGTAGATCAAGCATTACAGGAC
TAATATTAACAAGAGATGGTGG---------GAA------TAATAATAATACC------A
ATGAGACCTTCAGACCTGGAGGAGGAGACATGAGGGGCAATTGGAGAAGTGAATTATATA
AGTATAAAGTAGTAAAAATCAAATCACTAGGAGTAGCACCCACCAGGGCAAGGAGAAGAG
TGGTGGAG---AGAGAAAAAAGAGCAATTGGA---CTGGGAGCTGTCTTCCTTGGGTTCT
TAGGAGCAGCAGGAAGCACT

>vi557-H2
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-----------------------------------------------AACCATGTAATAA
TTAGATCTAAAAATATCACAGACAATACCAAAAACATAATAGTACAGCTTAAAAGTCCTG
TACCAATTAACTGTACCAGACCCAACAATAATACGAGAAAAAGTATAAGTATAGGGCCAG
GACAAGCATTCTATGCAACAGGTGACATCATAGGAGATATAAGAAAAGCATATTGTAATA
TTACTAGGGAAGATTGGAAAAGGACTTTACATGAGGTAGTTCAGCAATTAAGAGAACACT
TTAATAATCAAACAATAATTTTCGAACCATCCTCAGGAGGGGACATGGAAATTACAATGC
ATACTTTTAATTGTAGAGGAGAATTTTTCTATTGCAATACATCAAAATTGTTTAACAGTA
CTTGGG---TTAACAG---TACATCAAATGATATCTCAAATGGCACAACAAT--------
-AATTGAACTGCCATGCAGAATAAAACAAATTATAAACATGTGGCAGAGAGTAGGACAAG
CAATGTATGCCCCTCCCATC---AAAGGAAAAATTACATGTGAATCAAATATTACAGGGC
TAATATTGACAAGTGATCATG---------------------TTAATTCTGCAGAAAGTA
ATGTTACCTTCAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATA
AATATAAAGTAGTAAGAGTCGAACCACTAGGATTAGCACCCACCAGGGCAAGGAGAAGAG
TGGTGGAA---AGAGAAAAAAGAGCTGTGGGA---CTGGAAGCTGTTTTCCTTGGGTTCT
TGGGAGCAGCAGGGAGCACT

>se9173-J1
ATGGGATGAAAGCTTAAAGCCATGTGTAAAGATAACCCCTCTCTGTGTCACTTTAAATTG
TAGCGAC------------------------------GTCAATAGTAACAATAGTACAGA
TAGTAATAGTAGTGCAAGCAACAATAGTCCT---------GAAATCATGAAAAACTGCTC
TTTCAATGTAACTACAGAAATAAGAAATAAAAGGAAGCAAGAATACGCGCTTTTCTATAG
ACAAGATGTAGTACCAAT---------TAATAGTGACAA------TAAAAGT---TATAT
TCTAATAAACTGTAATACCTCAGTTATTAAACAGGCTTGTCCAAAGGTGTCTTTTCAACC
AATTCCCATACATTATTGTGCTCCAGCTGGTTTTGCGATTCTAAAATGTAATAATAAGAC
TTTCAATGGAACAGGACCATGCAAAAATGTCAGTACAGTACAATGTACACACGGAATTAA
GCCAGTG-GTATCAACTCAACTACTGCTAAATGGCAGTGTAGCAGAAGGAGACATAATAA
TTAGATCTGAAAATATCTCAGACAATGCTAAAAACATAATAGTACAACTTAATGACACTG
TAGAAATTGTGTGTACCAGACCTAATAACAATACAAGAAAAGGTATACACATGGGACCAG
GACAAGTGCTCTACGCAACAGGGGAAATAATAGGAGATATAAGGAAAGCATATTGTAACA
TTAGTAGAAAAGATTGGAATAACACTTTACGTAGAGTAGCTAAAAAACTAAGAGAACACT
TTAATAAAACA---ATAGACTTTACATCACCCTCAGGAGGGGACATAGAAATTACAACAC
ATAGTTTTAATTGTGGAGGAGAATTTTTCTATTGTAATACATCAACACTGTTCAATAGTA
GTTGGGATGAGAATAACATTAAGGACACAAATAGTACAAATGACAACACAAC--------
-TATCACAATACCATGTAAAATAAAACAAATTGTGAGAATGTGGCAAAGAACAGGACAAG
CAATATATGCCCCTCCCATC---GCAGGAAACATTACATGCAAATCAAATATTACAGGAT
TATTATTGACACGTGATGGAGG---------AAACA---GGAATGGCAGTGAGAATGGCA
CTGAGACCTTCAGACCTACAGGAGGAAATATGAAAGATAATTGGAGAAGTGAATTATATA
AATATAAAGTAGTAGAGCTTGAGCCACTAGGAGTAGCACCCACCAAGGCAAAAAGAAGAG
TGGTGGAG---AGAGAAAAAAGAGCAGTGGGA---ATAGGAGCTGTGTTCCTTGGGTTCT
TGGGAACAGCAGGAAGCACT

>se9280-J2
ATGGGATGAAAGCTTAAAGCCATGTGTAAAGATAACCCCTCTATGTGTCACTTTAAATTG
TAGTAAC------------------------------ATCACTAGTAACAGTAATACAAC
TAGTAACAGTAGTGTAAGT------AGTCCT---------GATATCATGACAAACTGCTC
TTTCAATATAACTACAGAAATAAGAAATAAAAGGAAGCAAGAGTACGCGCTTTTCTATAG
ACAAGATGTAGTACCAAT---------TGATAGTAACAA------TAAAAAT---TATAT
TCTAATAAACTGTAATACCTCAGTCATTAAACAAGCTTGTCCAAAGGTGTCTTTTCAACC
AATTCCCATACATTATTGTGCCCCAGCTGGTTTTGCGATTCTAAAATGTAATGATAAGAA
TTTCAATGGAACAGGATCATGCAAAAATGTCAGTACAGTACAATGTACACACGGAATTAA
GCCAGTG-GTATCAACTCAACTACTGCTAAATGGCAGTATAGCAGAAGGAGACATAATAA
TTAGATCTGAAAACATCTCAGACAATGCCAAAAACATAATAGTACAACTTAATAAAACTG
TAGAAATTGTGTGTTACAGACCTAATAACAATACAAGGAAAGGTATACACATGGGACCAG
GACAAGTGCTCTACGCAACAGGAGAAATAATAGGAAATATAAGAGAAACACATTGTAACA
TTAGTGAAAGAGATTGGAGTAACACTTTACGTAGAGTAGCTACAAAACTAAGAGAACACT
TTAATAAAACA---ATAAACTTTACATCACCCTCAGGAGGGGATATAGAAATTGTGACAC
ATAGTTTTAATTGTGGAGGAGAATTTTTATATTGTAATACATCAAAACTGTTCAATAGTA
GTTGGGATAAGAATAGCATTGAAGCTACAAATGACACAAGT---NACGCAAC--------
-TATCACAATACCATGTAAAATAAAACAAATTGTGAGAATGTGGCAAAGGACAGGACAAG
CAATCTATGCCCCTCCCATT---GCAGGAAACATTACGTGCACATCAAATATTACAGGAT
TACTATTGACACGTGATGGAGG---------AAACAGGGGGAATGGCAGTGAGAATGGCA
CTGAGACCTTCAGACCTACAGGAGGAAATATGAAGGACAATTGGAGAAGTGAATTATATA
AATATAAAGTAGTAGAGATTGAGCCACTAGGAGTAGCACCCACCAAGGCAAAAAGAAGAG
TGGTGGAG---AGAGAAAAAAGAGCAGTGGGA---ATAGGAGCTGTGTTCCTTGGGTTCT
TGGGAACAGCAGGAAGTACT

>primer_ed5
ATGGGATCAAAGCCTAAAGCCATGTG----------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------

>primer_ed31
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-----------------CCTCAGCCATTACACAGGCCTGTCCAAAG--------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------

>primer_es7
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-----TGTAAAACGACGGCCAGTCTGTTAAATGGCAGTCTAGC-----------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------

>primer_ed33REVERSECOMPLEMENT
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------GAGGGGAATTTTTCTACTGTAA-----------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------

>primer_es8REVERSECOMPLEMENT
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------TGAGGGACAATTGGAGAAGTGGGTCATAGC
TGTTTCCTG---------------------------------------------------
------------------------------------------------------------
--------------------

>primer_ed12REVERSECOMPLEMENT
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------------------------CTTGGGTTCT
TGGGAGCAGCAGGAAGCACT

 

 
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