Sequence Analysis for Research Genetics Clones
Fetch files from CFAR DSF ftp-site
Start SEQUENCHER
Drag sequences to SEQUENCHER window
Open files by double clicking
Only use files with good signal
Find restriction site of vector (eg. EcoRI GAATTC) with FIND option
Crop vector sequence
Open chromatogram
Find where good sequence ends or poly A tail starts
Crop rest of sequence
Export sequence as Pearson text
One file:
copy sequence into window at NCBI webpage
do basic blastn nr search
Multiple files:
start SEARCH LAUNCHER by dropping sequence files onto the camel symbol
type DNA
type 10 (BLASTN NR) or 12 (dbEST)
results are returned into the SEARCH LAUNCHER directory